Debian Bookworm

GNU R statistical computation and graphics system

GNU R core of statistical computation and graphics system

GNU R installation of auxiliary GNU R packages

GNU R html docs for statistical computing system functions

Affymetrix File Parsing SDK

BioConductor methods for Affymetrix Oligonucleotide Arrays

BioConductor tools for parsing Affymetrix data files

Bioconductor data package used by several bioc tools

BioConductor alternative CDF environments

BioConductor annotation for microarrays

GNU R Annotation Database Interface for BioConductor

facilities for filtering Bioconductor annotation resources

GNU R client to access AnnotationHub resources

BioConductor methods normalization and visualization of microarray data

access to the ArrayExpress Microarray Database at EBI

Flexible, isoform-level differential expression analysis

freezing Python dependencies inside Bioconductor packages

Bioconductor basilisk installation utilities

I/O for several formats storing matrix data

base functions for Bioconductor

General utility functions for developing Bioconductor packages

Bioconductor-specific package checks

GNU R management of files across sessions

generic functions for Bioconductor

standard input and output for Bioconductor packages

Nearest Neighbor Detection for Bioconductor Packages

BioConductor facilities for parallel evaluation

Singular Value Decomposition for Bioconductor Packages

standard styles for vignettes and other Bioconductor documents

set the appropriate version of Bioconductor packages

Categorized views of R package repositories

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

GNU R interface package for the BIOM file format

GNU R string objects representing biological sequences

GNU R basic graphic utilities for visualization of genomic data

GNU R bladder gene expression data illustrating batch effects

Clustering Algorithms for Bioconductor

BioConductor infrastructure for Biostrings-based genome data packages

Bioconductor analyze, manage and store bisulfite sequencing data

Cheminformatics Toolkit for R

CNE Detection and Visualization

make complex heatmaps using GNU R

GNU R determining cluster count and membership

Cluster and Tree Conversion

tool for analysis of Cufflinks RNA-Seq output

sample inference from amplicon sequencing data

infer biological activities from omics data

DegNorm: degradation normalization for RNA-seq data

BioConductor report of DEG analysis

BioConductor delayed operations on array-like objects